PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18758.4 Da    PI: 9.1893
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513661.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rienk+nrqvtfskRr g+lKKA+EL+vLCdaeva+iifss+gkl+ yss
  XP_004513661.1  9 ERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSS 59
                    69***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.964161IPR002100Transcription factor, MADS-box
CDDcd002652.58E-40278No hitNo description
SuperFamilySSF554553.27E-32278IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-1685143IPR002487Transcription factor, K-box
PROSITE profilePS5129710.30687162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRGRVVLER IENKINRQVT FSKRRSGLLK KAFELCVLCD AEVALIIFSS RGKLFQYSST  60
DISKIIERYR QCRYNKLQAA NSFGHESQNI YQEYLKLKGK YESLDRRQRH FHGEELEALS  120
MKELQSLEEQ LESTLAQVRQ QQDGCDYGST CKGTPTPNSI IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D2e-23271170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-23271170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-23271170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A2e-23271170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1c7u_B2e-23275172MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_A2e-23275172MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
3p57_J3e-23271170Myocyte-specific enhancer factor 2A
3p57_I3e-23271170Myocyte-specific enhancer factor 2A
3p57_D3e-23271170Myocyte-specific enhancer factor 2A
3p57_C3e-23271170Myocyte-specific enhancer factor 2A
3p57_B3e-23271170Myocyte-specific enhancer factor 2A
3p57_A3e-23271170Myocyte-specific enhancer factor 2A
3kov_J3e-23271170Myocyte-specific enhancer factor 2A
3kov_I3e-23271170Myocyte-specific enhancer factor 2A
3kov_B3e-23271170Myocyte-specific enhancer factor 2A
3kov_A3e-23271170Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1372897e-92BT137289.1 Medicago truncatula clone JCVI-FLMt-16G17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513661.11e-117PREDICTED: MADS-box transcription factor 6-like isoform X3
SwissprotQ6EU393e-57MADS6_ORYSJ; MADS-box transcription factor 6
TrEMBLA0A072UC002e-83A0A072UC00_MEDTR; MADS-box transcription factor
STRINGGLYMA09G27461.12e-73(Glycine max)
STRINGGLYMA16G32540.11e-73(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-48MIKC_MADS family protein